Variant report

Variant	rs72756563
Chromosome Location	chr9:117656609-117656610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72756550	1.00[EUR][1000 genomes]
rs72756551	1.00[EUR][1000 genomes]
rs72756579	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893767	chr9:117627569-117689838	Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117651600-117656800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:117651600-117657000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:117651800-117656800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr9:117651800-117657200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:117652600-117656800	Weak transcription	Esophagus	oesophagus
6	chr9:117652600-117660000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:117652600-117662000	Weak transcription	Gastric	stomach
8	chr9:117652800-117657000	Weak transcription	Stomach Mucosa	stomach
9	chr9:117654400-117657400	Enhancers	HUVEC	blood vessel
10	chr9:117654400-117659000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr9:117654400-117661000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr9:117654800-117658600	Enhancers	Primary B cells from peripheral blood	blood
13	chr9:117655000-117656800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr9:117655200-117657000	Enhancers	Hela-S3	cervix
15	chr9:117655200-117658000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:117655200-117660600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr9:117655200-117661800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr9:117655400-117657000	Enhancers	NH-A	brain
19	chr9:117655400-117657800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:117655400-117657800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:117655400-117658000	Enhancers	HMEC	breast
22	chr9:117655400-117660200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:117655400-117660200	Enhancers	NHLF	lung
24	chr9:117655400-117661400	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr9:117655600-117657400	Enhancers	NHDF-Ad	bronchial
26	chr9:117655600-117658200	Enhancers	NHEK	skin
27	chr9:117655600-117664800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr9:117655800-117657400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:117655800-117657800	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr9:117655800-117658200	Enhancers	Liver	Liver
31	chr9:117655800-117659200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:117655800-117660200	Enhancers	Osteobl	bone
33	chr9:117656000-117657000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr9:117656000-117657400	Enhancers	Primary hematopoietic stem cells	blood
35	chr9:117656000-117657600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:117656000-117657800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr9:117656000-117657800	Enhancers	Fetal Intestine Small	intestine
38	chr9:117656000-117657800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr9:117656000-117658200	Enhancers	Fetal Intestine Large	intestine
40	chr9:117656000-117658400	Enhancers	Adipose Nuclei	Adipose
41	chr9:117656000-117658600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr9:117656000-117658600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr9:117656000-117658600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr9:117656000-117658600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr9:117656000-117658600	Enhancers	HepG2	liver
46	chr9:117656000-117658600	Enhancers	HSMM	muscle
47	chr9:117656000-117660200	Enhancers	Muscle Satellite Cultured Cells	--
48	chr9:117656200-117657000	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr9:117656200-117657000	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr9:117656200-117657000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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