Variant report

Variant	rs72756583
Chromosome Location	chr9:117688260-117688261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56357980	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893767	chr9:117627569-117689838	Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117673200-117692400	Weak transcription	Spleen	Spleen
2	chr9:117680200-117690400	Weak transcription	Fetal Thymus	thymus
3	chr9:117680600-117688400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:117680800-117689600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr9:117682000-117689600	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr9:117682400-117689800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr9:117683200-117689000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
8	chr9:117683400-117688600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
9	chr9:117684400-117689600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:117684800-117688600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr9:117686000-117688600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
12	chr9:117686400-117689400	Enhancers	Primary T cells from cord blood	blood
13	chr9:117686600-117688800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:117686800-117688600	Enhancers	Adipose Nuclei	Adipose
15	chr9:117686800-117688800	Enhancers	Primary B cells from peripheral blood	blood
16	chr9:117687000-117688600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
17	chr9:117687000-117688800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr9:117687000-117688800	Enhancers	Placenta	Placenta
19	chr9:117687000-117689400	Enhancers	Dnd41	blood
20	chr9:117687200-117688800	Enhancers	Primary B cells from cord blood	blood
21	chr9:117687200-117688800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr9:117687400-117690200	Weak transcription	Liver	Liver
23	chr9:117687600-117689200	Genic enhancers	Monocytes-CD14+_RO01746	blood
24	chr9:117687800-117688800	Enhancers	Primary T cells fromperipheralblood	blood
25	chr9:117687800-117688800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr9:117687800-117689400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:117687800-117689600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr9:117687800-117689600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr9:117687800-117693400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr9:117688000-117688600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
31	chr9:117688000-117689000	Enhancers	Placenta Amnion	Placenta Amnion
32	chr9:117688000-117689600	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr9:117688200-117688400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
34	chr9:117688200-117688400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr9:117688200-117688400	Active TSS	Thymus	Thymus
36	chr9:117688200-117688600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
37	chr9:117688200-117688600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr9:117688200-117688600	Enhancers	Fetal Lung	lung
39	chr9:117688200-117688800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
40	chr9:117688200-117689000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr9:117688200-117689000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr9:117688200-117689600	Enhancers	Primary monocytes fromperipheralblood	blood

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