Variant report

Variant	rs72761383
Chromosome Location	chr5:44267411-44267412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17228283	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17234268	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17234541	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17250784	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56107445	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72763164	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763176	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763179	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72763180	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72763181	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72763190	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72763193	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72763201	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1019047	chr5:43939693-44301657	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44257800-44270400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:44264400-44267800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:44264600-44267600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:44266200-44268600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:44266200-44268800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:44266200-44268800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:44267200-44267800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:44267200-44267800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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