Variant report

Variant	rs72761522
Chromosome Location	chr1:215015337-215015338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72761543	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873167	chr1:214950361-215116947	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873168	chr1:214962771-215064388	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215002000-215019600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:215010400-215017400	Enhancers	NHDF-Ad	bronchial
3	chr1:215012000-215016000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:215012400-215019400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:215012600-215016400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:215012600-215021000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:215013000-215015400	Weak transcription	NH-A	brain
8	chr1:215013000-215016600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:215013000-215021000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:215013600-215016000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:215013800-215016000	Weak transcription	NHLF	lung
12	chr1:215014200-215015800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:215014400-215016400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:215015200-215017000	Enhancers	HSMM	muscle
15	chr1:215015200-215017400	Enhancers	Osteobl	bone
16	chr1:215015200-215017600	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links