Variant report

Variant	rs72761545
Chromosome Location	chr1:215076781-215076782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34015427	1.00[AFR][1000 genomes]
rs61819980	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873167	chr1:214950361-215116947	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215072200-215076800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:215072800-215077000	Enhancers	NHDF-Ad	bronchial
3	chr1:215072800-215077000	Enhancers	Osteobl	bone
4	chr1:215073400-215076800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215073400-215077000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:215073600-215076800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:215073600-215077000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:215073600-215077000	Enhancers	HMEC	breast
9	chr1:215074000-215077000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:215074000-215077000	Enhancers	NHEK	skin
11	chr1:215074400-215077000	Enhancers	NHLF	lung
12	chr1:215074600-215077000	Enhancers	HUVEC	blood vessel
13	chr1:215074800-215076800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:215074800-215076800	Enhancers	Hela-S3	cervix
15	chr1:215074800-215077000	Enhancers	NH-A	brain
16	chr1:215075400-215077200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr1:215076200-215077000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:215076400-215077000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:215076400-215077600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links