Variant report

Variant	rs72762218
Chromosome Location	chr5:54191244-54191245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs72760125	1.00[AFR][1000 genomes]
rs72760135	1.00[AFR][1000 genomes]
rs72760143	1.00[AFR][1000 genomes]
rs72760147	1.00[AFR][1000 genomes]
rs72760150	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72760157	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72762213	1.00[AFR][1000 genomes]
rs72762245	1.00[AFR][1000 genomes]
rs73755284	1.00[AFR][1000 genomes]
rs7449307	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv598179	chr5:54156269-54192823	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54186200-54196600	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:54190800-54191400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:54190800-54191800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:54190800-54191800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:54191000-54191600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:54191000-54191600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr5:54191000-54192000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:54191000-54192000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:54191200-54191400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:54191200-54191400	Enhancers	HSMMtube	muscle
11	chr5:54191200-54191600	Enhancers	Fetal Kidney	kidney
12	chr5:54191200-54191800	Bivalent Enhancer	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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