Variant report
| Variant | rs7276284 |
|---|---|
| Chromosome Location | chr21:16878170-16878171 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr21:16435921..16437860-chr21:16878059..16879589,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000180530 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs2823313 | 1.00[AFR][1000 genomes] |
| rs57331457 | 0.97[AFR][1000 genomes] |
| rs59490564 | 0.97[AFR][1000 genomes] |
| rs61517454 | 0.97[AFR][1000 genomes] |
| rs7276700 | 0.97[AFR][1000 genomes] |
| rs7277456 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7279471 | 0.97[AFR][1000 genomes] |
| rs7283642 | 0.97[AFR][1000 genomes] |
| rs73892630 | 0.97[AFR][1000 genomes] |
| rs73892631 | 0.97[AFR][1000 genomes] |
| rs73892632 | 0.97[AFR][1000 genomes] |
| rs8131701 | 0.97[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1063385 | chr21:16521617-16926212 | Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1064280 | chr21:16664312-17049272 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv834049 | chr21:16717421-16905300 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
