Variant report

Variant	rs72765242
Chromosome Location	chr5:61177172-61177173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10059717	0.84[EUR][1000 genomes]
rs10939916	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10939917	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11748712	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12515900	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1995273	0.84[EUR][1000 genomes]
rs2055380	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2197509	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs55916023	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72765230	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020693	chr5:61098865-61357032	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv965604	chr5:61171281-61182073	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61174800-61177200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:61174800-61177200	Weak transcription	NHEK	skin
3	chr5:61174800-61177600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:61175000-61177200	Weak transcription	HMEC	breast
5	chr5:61177000-61178000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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