Variant report

Variant	rs72770966
Chromosome Location	chr10:199509-199510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:179114..184532-chr10:197541..200873,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000015171	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72770935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72771000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72772839	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531919	chr10:60001-668649	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1040332	chr10:72797-244561	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1044775	chr10:72797-250662	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1047868	chr10:72797-259003	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1048232	chr10:72797-274675	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:183200-205400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr10:183400-200800	Weak transcription	Thymus	Thymus
3	chr10:184400-199600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:184400-200200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:184600-200000	Weak transcription	NHLF	lung
6	chr10:186200-199800	Weak transcription	Right Ventricle	heart
7	chr10:188000-200400	Weak transcription	Primary B cells from cord blood	blood
8	chr10:188400-199600	Weak transcription	Ovary	ovary
9	chr10:188400-199600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:188800-202600	Weak transcription	A549	lung
11	chr10:189000-204000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr10:189000-208800	Weak transcription	Small Intestine	intestine
13	chr10:189200-199800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:189200-199800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:189200-201800	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:189400-200200	Weak transcription	Fetal Heart	heart
17	chr10:190400-200200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:190400-215200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr10:190600-203200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:190600-212800	Weak transcription	Left Ventricle	heart
21	chr10:191400-199800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr10:194000-199800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr10:194000-211400	Weak transcription	Fetal Lung	lung
24	chr10:194200-228200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:194600-210400	Weak transcription	Primary T cells from cord blood	blood
26	chr10:194800-200200	Weak transcription	Gastric	stomach
27	chr10:194800-206200	Weak transcription	Pancreas	Pancrea
28	chr10:194800-212600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:195400-207000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr10:196400-206200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:196800-215000	Weak transcription	Fetal Intestine Large	intestine
32	chr10:197000-200800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:197000-209600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:197200-200000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr10:197200-200200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:197400-209200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:197400-210400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr10:197400-211200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr10:197800-219800	Weak transcription	HUVEC	blood vessel
40	chr10:198200-200000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr10:198400-200200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:198600-206000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:199000-200400	Enhancers	HSMM	muscle
44	chr10:199200-199600	Enhancers	Pancreatic Islets	Pancreatic Islet

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