Variant report

Variant	rs72771419
Chromosome Location	chr10:23731140-23731141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23728096..23730469-chr10:23730500..23732412,3	MCF-7	breast:
2	chr10:23729334..23732028-chr10:23747440..23749180,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs74122448	1.00[AFR][1000 genomes]
rs74125304	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv975033	chr10:23726218-23738848	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23727200-23731400	Active TSS	HSMMtube	muscle
2	chr10:23727200-23731600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:23727200-23731800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:23727400-23731400	Active TSS	Left Ventricle	heart
5	chr10:23727400-23731400	Active TSS	Ovary	ovary
6	chr10:23727400-23732200	Active TSS	Right Atrium	heart
7	chr10:23727400-23732800	Active TSS	Right Ventricle	heart
8	chr10:23729000-23731400	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr10:23729200-23731600	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr10:23729200-23732200	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
11	chr10:23729400-23731200	Flanking Active TSS	Primary T cells from cord blood	blood
12	chr10:23729400-23731200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
13	chr10:23729400-23732000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr10:23729400-23732400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
15	chr10:23729600-23731200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
16	chr10:23729600-23731400	Weak transcription	Small Intestine	intestine
17	chr10:23729600-23731600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:23729600-23731600	Active TSS	Fetal Muscle Trunk	muscle
19	chr10:23729600-23731800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr10:23729800-23731200	Flanking Active TSS	Dnd41	blood
21	chr10:23729800-23731400	Active TSS	Fetal Muscle Leg	muscle
22	chr10:23729800-23731400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:23729800-23731600	Flanking Active TSS	Liver	Liver
24	chr10:23729800-23731600	Weak transcription	Pancreas	Pancrea
25	chr10:23729800-23731600	Weak transcription	Spleen	Spleen
26	chr10:23729800-23732000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:23729800-23732000	Flanking Active TSS	Brain Anterior Caudate	brain
28	chr10:23729800-23732600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:23729800-23734400	Weak transcription	K562	blood
30	chr10:23729800-23736400	Weak transcription	Gastric	stomach
31	chr10:23729800-23738400	Weak transcription	Esophagus	oesophagus
32	chr10:23729800-23738400	Weak transcription	Lung	lung
33	chr10:23730000-23731200	Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr10:23730000-23731200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr10:23730000-23731200	Active TSS	GM12878-XiMat	blood
36	chr10:23730000-23731400	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr10:23730000-23731400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:23730000-23731400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr10:23730000-23731800	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr10:23730000-23732000	Flanking Active TSS	Fetal Heart	heart
41	chr10:23730000-23732400	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr10:23730000-23735800	Weak transcription	HUVEC	blood vessel
43	chr10:23730200-23731400	Active TSS	Brain Angular Gyrus	brain
44	chr10:23730200-23731600	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr10:23730200-23732200	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr10:23730200-23733000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:23730400-23731200	Flanking Active TSS	Colon Smooth Muscle	Colon
48	chr10:23730400-23731800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr10:23730400-23734800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr10:23730600-23731200	Flanking Active TSS	Brain Germinal Matrix	brain

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