Variant report

Variant	rs72772023
Chromosome Location	chr5:95936917-95936918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95680204..95681599-chr5:95936681..95938160,14	MCF-7	breast:
2	chr5:95936365..95939186-chr5:96519046..96521113,3	K562	blood:

Variant related genes	Relation type
ENSG00000251513	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11744742	0.80[EUR][1000 genomes]
rs11748144	0.80[EUR][1000 genomes]
rs11749612	0.80[EUR][1000 genomes]
rs6859114	1.00[ASN][1000 genomes]
rs6859790	1.00[ASN][1000 genomes]
rs6861034	1.00[ASN][1000 genomes]
rs6865158	0.94[ASN][1000 genomes]
rs6880943	1.00[ASN][1000 genomes]
rs6882602	0.88[ASN][1000 genomes]
rs72772004	0.87[EUR][1000 genomes]
rs72772009	0.87[EUR][1000 genomes]
rs72772010	0.87[EUR][1000 genomes]
rs72772014	0.87[EUR][1000 genomes]
rs72772015	0.87[EUR][1000 genomes]
rs72772019	0.87[EUR][1000 genomes]
rs72772022	1.00[EUR][1000 genomes]
rs72772028	1.00[EUR][1000 genomes]
rs72772031	1.00[EUR][1000 genomes]
rs72772034	1.00[EUR][1000 genomes]
rs72772036	1.00[EUR][1000 genomes]
rs72772037	1.00[EUR][1000 genomes]
rs73774321	1.00[ASN][1000 genomes]
rs7707773	0.87[EUR][1000 genomes]
rs7708703	0.93[EUR][1000 genomes]
rs7727536	1.00[ASN][1000 genomes]
rs7731596	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1024964	chr5:95742124-96065492	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv537811	chr5:95742124-96065492	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv1026484	chr5:95759910-95961518	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95933800-95937400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:95933800-95941000	Weak transcription	Osteobl	bone
3	chr5:95936200-95937600	Flanking Active TSS	HUVEC	blood vessel
4	chr5:95936600-95937000	Enhancers	Brain Anterior Caudate	brain
5	chr5:95936600-95937800	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr5:95936800-95937200	Enhancers	Adipose Nuclei	Adipose
7	chr5:95936800-95937200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:95936800-95937400	Enhancers	Brain Hippocampus Middle	brain
9	chr5:95936800-95937600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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