Variant report

Variant	rs72774706
Chromosome Location	chr10:3994302-3994303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3827341..3829174-chr10:3993073..3995217,2	K562	blood:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11252209	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252230	0.81[EUR][1000 genomes]
rs11814797	0.81[EUR][1000 genomes]
rs12217980	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12219083	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1409209	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56154000	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56250932	0.83[EUR][1000 genomes]
rs57872033	0.83[EUR][1000 genomes]
rs72774717	0.83[EUR][1000 genomes]
rs7900453	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:3979000-3994400	Weak transcription	Stomach Mucosa	stomach
2	chr10:3981800-4001800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:3986000-3997600	Weak transcription	Right Atrium	heart
4	chr10:3988800-3997400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:3990000-3998400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:3990600-3994600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr10:3991400-3997800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:3991400-3997800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:3992000-3997400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:3992200-3994400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:3992200-3996800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:3992200-3996800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr10:3992200-3997600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr10:3992400-3996800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:3992400-3997000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:3992400-3997000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:3992400-3997600	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:3992800-3994600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr10:3993000-3997400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr10:3993800-4001800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:3994000-3995000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr10:3994200-3994600	Enhancers	Gastric	stomach
23	chr10:3994200-3994600	Enhancers	Pancreas	Pancrea

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