Variant report

Variant	rs7277537
Chromosome Location	chr21:16239139-16239140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17274666	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2158678	chr21:16239139-16239140	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16230000-16241000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr21:16230800-16241200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr21:16233400-16243200	Weak transcription	Dnd41	blood
4	chr21:16235600-16239200	Enhancers	A549	lung
5	chr21:16236200-16239400	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr21:16236400-16240800	Weak transcription	NHLF	lung
7	chr21:16236600-16240600	Weak transcription	Fetal Lung	lung
8	chr21:16237000-16239200	Weak transcription	Left Ventricle	heart
9	chr21:16237000-16239200	Weak transcription	Ovary	ovary
10	chr21:16237000-16240400	Weak transcription	Fetal Thymus	thymus
11	chr21:16237000-16240600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr21:16237000-16240600	Weak transcription	Fetal Stomach	stomach
13	chr21:16237000-16240800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr21:16237000-16242400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr21:16237400-16239400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr21:16237400-16240400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr21:16237400-16240600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr21:16237400-16240600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr21:16237400-16240600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr21:16237400-16240600	Weak transcription	Brain Angular Gyrus	brain
21	chr21:16237400-16240600	Weak transcription	Brain Anterior Caudate	brain
22	chr21:16237400-16240800	Weak transcription	Osteobl	bone
23	chr21:16237400-16241000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr21:16237400-16241000	Weak transcription	NHDF-Ad	bronchial
25	chr21:16237400-16241400	Weak transcription	K562	blood
26	chr21:16237400-16242400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr21:16237400-16242400	Weak transcription	Stomach Mucosa	stomach
28	chr21:16237400-16247000	Weak transcription	Psoas Muscle	Psoas
29	chr21:16237400-16248400	Weak transcription	HSMM	muscle
30	chr21:16237600-16239400	Weak transcription	NH-A	brain
31	chr21:16237600-16240200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr21:16237600-16240600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr21:16237600-16240600	Weak transcription	Fetal Kidney	kidney
34	chr21:16237600-16240800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr21:16237600-16240800	Weak transcription	GM12878-XiMat	blood
36	chr21:16237600-16241200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr21:16237600-16241200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr21:16237600-16241200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr21:16237600-16242600	Weak transcription	Fetal Intestine Small	intestine
40	chr21:16238000-16243200	Weak transcription	Fetal Intestine Large	intestine
41	chr21:16238000-16244400	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr21:16238000-16248400	Weak transcription	Liver	Liver
43	chr21:16238200-16239200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr21:16238200-16240800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr21:16238400-16239600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr21:16238400-16239800	Enhancers	HMEC	breast
47	chr21:16238400-16241600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr21:16238600-16239200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr21:16238600-16239400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr21:16238600-16239400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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