Variant report

Variant	rs7277560
Chromosome Location	chr21:15917561-15917562
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:15915978..15918625-chr21:15919465..15922478,3	K562	blood:
2	chr21:15915395..15917614-chr21:16129062..16131798,2	K562	blood:
3	chr21:15916860..15919721-chr21:16123639..16127207,4	K562	blood:
4	chr21:15916876..15918776-chr21:16125268..16127207,2	K562	blood:
5	chr21:15916304..15917888-chr21:16008677..16010503,2	K562	blood:
6	chr21:15915303..15917955-chr21:15967480..15970218,2	K562	blood:
7	chr21:15915915..15918568-chr21:15923468..15925442,2	K562	blood:
8	chr21:15916866..15918516-chr21:16085549..16087908,2	K562	blood:
9	chr21:15916155..15921451-chr21:15952417..15958327,11	K562	blood:
10	chr21:15916330..15918586-chr21:16097161..16099794,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000155307	Chromatin interaction
ENSG00000228600	Chromatin interaction
ENSG00000223662	Chromatin interaction
ENSG00000232884	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11700725	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980954	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2223091	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28701010	0.81[ASN][1000 genomes]
rs6516877	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66740377	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7280738	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7281104	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9979842	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9979867	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9982259	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1056423	chr21:15838309-15948474	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv544376	chr21:15855470-15948474	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1065823	chr21:15863224-15948474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1057934	chr21:15863224-15969195	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1058533	chr21:15896056-15948474	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv544377	chr21:15896056-15948474	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv2763685	chr21:15904945-15933282	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv587048	chr21:15908642-15932610	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv522627	chr21:15908642-15936503	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15913600-15919200	Active TSS	K562	blood
2	chr21:15913800-15918000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
3	chr21:15914000-15918800	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr21:15914000-15919000	Active TSS	GM12878-XiMat	blood
5	chr21:15914200-15918800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr21:15914400-15918000	Flanking Active TSS	Primary T cells from cord blood	blood
7	chr21:15914800-15917800	Weak transcription	Thymus	Thymus
8	chr21:15914800-15918600	Active TSS	Primary B cells from cord blood	blood
9	chr21:15915400-15918400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr21:15915600-15918800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr21:15916000-15918600	Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr21:15916000-15918600	Active TSS	Adipose Nuclei	Adipose
13	chr21:15916200-15918400	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr21:15916200-15918400	Active TSS	Rectal Mucosa Donor 31	rectum
15	chr21:15916200-15918600	Active TSS	Duodenum Mucosa	Duodenum
16	chr21:15916400-15917600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr21:15916400-15918400	Active TSS	Fetal Muscle Leg	muscle
18	chr21:15916400-15918800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
19	chr21:15916600-15918200	Weak transcription	Right Atrium	heart
20	chr21:15916600-15918800	Active TSS	Primary hematopoietic stem cells	blood
21	chr21:15916600-15918800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr21:15916600-15918800	Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr21:15916800-15917600	Weak transcription	Brain Hippocampus Middle	brain
24	chr21:15916800-15917800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr21:15916800-15918200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
26	chr21:15916800-15918600	Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr21:15916800-15918600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
28	chr21:15916800-15918800	Active TSS	Primary monocytes fromperipheralblood	blood
29	chr21:15916800-15918800	Active TSS	Primary T cells fromperipheralblood	blood
30	chr21:15916800-15918800	Active TSS	Primary T helper naive cells from peripheral blood	blood
31	chr21:15916800-15918800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
32	chr21:15916800-15919000	Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr21:15917000-15918600	Active TSS	Monocytes-CD14+_RO01746	blood
34	chr21:15917000-15918800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
35	chr21:15917000-15918800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr21:15917200-15918600	Active TSS	Dnd41	blood
37	chr21:15917400-15917600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr21:15917400-15918800	Active TSS	Fetal Thymus	thymus
39	chr21:15917400-15919000	Flanking Active TSS	HUVEC	blood vessel

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