Variant report

Variant	rs72775661
Chromosome Location	chr5:98360589-98360590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11739912	0.83[ASN][1000 genomes]
rs12519797	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57195934	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61471055	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98353600-98361600	Weak transcription	Small Intestine	intestine
2	chr5:98356000-98360600	Weak transcription	Colonic Mucosa	Colon
3	chr5:98356400-98361000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:98356400-98361000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:98356400-98361000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:98356400-98361200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr5:98356400-98361200	Weak transcription	Fetal Stomach	stomach
8	chr5:98356400-98361600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:98356400-98361800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:98356400-98362400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:98356800-98361000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:98356800-98361000	Weak transcription	A549	lung
13	chr5:98356800-98361000	Weak transcription	HUVEC	blood vessel
14	chr5:98356800-98361200	Weak transcription	Adipose Nuclei	Adipose
15	chr5:98357000-98361200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr5:98357000-98362000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr5:98357400-98368400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr5:98358200-98366800	Weak transcription	K562	blood
19	chr5:98360000-98361400	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr5:98360000-98361800	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr5:98360000-98363200	Enhancers	Fetal Intestine Large	intestine
22	chr5:98360000-98363200	Enhancers	HepG2	liver
23	chr5:98360000-98363400	Enhancers	Stomach Mucosa	stomach
24	chr5:98360200-98361200	Enhancers	Liver	Liver
25	chr5:98360200-98361200	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr5:98360200-98362800	Enhancers	Duodenum Mucosa	Duodenum
27	chr5:98360200-98362800	Enhancers	Pancreas	Pancrea
28	chr5:98360200-98363400	Enhancers	Fetal Intestine Small	intestine
29	chr5:98360200-98369000	Enhancers	Primary B cells from peripheral blood	blood
30	chr5:98360400-98362200	Enhancers	GM12878-XiMat	blood
31	chr5:98360400-98362800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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