Variant report

Variant	rs72775862
Chromosome Location	chr5:96290055-96290056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96268650..96270760-chr5:96289002..96291090,2	MCF-7	breast:
2	chr5:96288865..96290845-chr5:96309578..96312231,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12055195	1.00[ASN][1000 genomes]
rs72777604	1.00[ASN][1000 genomes]
rs72777610	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv948703	chr5:96078309-96368839	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1027472	chr5:96081592-96337550	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1028741	chr5:96082401-96372165	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv949058	chr5:96082433-96390619	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv598963	chr5:96084776-96363407	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv531967	chr5:96127842-96302702	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96273000-96299200	Weak transcription	Aorta	Aorta
2	chr5:96273400-96292800	Weak transcription	K562	blood
3	chr5:96273800-96291200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:96274600-96293000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr5:96274600-96298400	Weak transcription	HSMM	muscle
6	chr5:96277800-96303800	Weak transcription	Pancreas	Pancrea
7	chr5:96278000-96296000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:96278200-96292400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr5:96278200-96314400	Weak transcription	Fetal Intestine Large	intestine
10	chr5:96279000-96290400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr5:96279800-96298400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:96279800-96303800	Weak transcription	Esophagus	oesophagus
13	chr5:96282000-96292000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr5:96282200-96292800	Weak transcription	NHLF	lung
15	chr5:96282200-96303800	Weak transcription	Spleen	Spleen
16	chr5:96283400-96296600	Weak transcription	NHDF-Ad	bronchial
17	chr5:96284800-96290200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr5:96285200-96292800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr5:96285400-96291000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr5:96285400-96292000	Weak transcription	Fetal Thymus	thymus
21	chr5:96285400-96293000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr5:96285400-96296000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:96285400-96304400	Weak transcription	Fetal Intestine Small	intestine
24	chr5:96286200-96293000	Weak transcription	Thymus	Thymus
25	chr5:96286400-96303800	Weak transcription	Right Ventricle	heart
26	chr5:96286800-96291400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr5:96287400-96290400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr5:96287400-96290400	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr5:96287800-96290200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr5:96287800-96292800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr5:96288000-96290200	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr5:96288000-96290200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr5:96288000-96290200	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr5:96288000-96290200	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr5:96288000-96290400	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr5:96288000-96290400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr5:96288200-96290200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:96288200-96293000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr5:96288400-96290200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr5:96288400-96290200	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr5:96288400-96303800	Weak transcription	Fetal Stomach	stomach
42	chr5:96288800-96290200	Enhancers	Duodenum Mucosa	Duodenum
43	chr5:96288800-96290200	Enhancers	Dnd41	blood
44	chr5:96288800-96290800	Weak transcription	Primary B cells from peripheral blood	blood
45	chr5:96288800-96296200	Weak transcription	Osteobl	bone
46	chr5:96288800-96296800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr5:96289000-96290600	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr5:96289000-96291000	Weak transcription	Placenta	Placenta
49	chr5:96289000-96291800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr5:96289000-96292400	Weak transcription	HepG2	liver

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