Variant report

Variant	rs72778878
Chromosome Location	chr5:117630408-117630409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs3924812	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72778876	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72778877	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72778879	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72778881	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72778884	0.81[EUR][1000 genomes]
rs72778885	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72786804	0.81[EUR][1000 genomes]
rs72786866	0.81[EUR][1000 genomes]
rs72786878	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72786880	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72786882	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72786885	1.00[AMR][1000 genomes]
rs72786886	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72786887	0.81[EUR][1000 genomes]
rs72786888	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72786889	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72786890	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72788066	1.00[AMR][1000 genomes]
rs72788067	1.00[AMR][1000 genomes]
rs72788069	1.00[AMR][1000 genomes]
rs72788070	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72788071	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72788074	0.81[EUR][1000 genomes]
rs72788076	0.81[EUR][1000 genomes]
rs72788078	0.81[EUR][1000 genomes]
rs72788081	0.81[EUR][1000 genomes]
rs72788083	0.81[EUR][1000 genomes]
rs72788088	0.81[EUR][1000 genomes]
rs72788089	0.81[EUR][1000 genomes]
rs72789747	0.81[EUR][1000 genomes]
rs72789749	0.81[EUR][1000 genomes]
rs72789750	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027428	chr5:117072745-118036353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv537877	chr5:117072745-118036353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1067621	chr5:117102544-118036352	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv531292	chr5:117102544-118036352	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	esv2422395	chr5:117442806-117887910	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv882762	chr5:117499480-117706786	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv432802	chr5:117612408-117921244	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:117629800-117630600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:117629800-117631000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:117630000-117631000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:117630200-117632000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:117630400-117630600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:117630400-117630800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:117630400-117631800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:117630400-117632200	Enhancers	HUES48 Cell Line	embryonic stem cell

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