Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10900899	1.00[ASN][1000 genomes]
rs11242630	1.00[ASN][1000 genomes]
rs11959317	1.00[ASN][1000 genomes]
rs12188989	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1422202	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17159492	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159517	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4512123	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56205882	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56307182	1.00[ASN][1000 genomes]
rs56379720	1.00[ASN][1000 genomes]
rs6884722	1.00[ASN][1000 genomes]
rs72780137	0.87[EUR][1000 genomes]
rs72780142	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72780143	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72780145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72780149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72780150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72780159	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72780162	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72780184	0.92[EUR][1000 genomes]
rs72782143	1.00[ASN][1000 genomes]
rs7720389	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv599332	chr5:106403516-106502006	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2752056	chr5:106422649-106563101	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106448400-106454000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:106452000-106454800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:106452600-106454000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:106452600-106454000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:106452600-106454600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:106452600-106454800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:106452800-106456400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:106453000-106454000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:106453000-106454400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:106453000-106455400	Weak transcription	Fetal Heart	heart
11	chr5:106453600-106453800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:106453600-106454000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr5:106453600-106454800	Enhancers	HUES6 Cell Line	embryonic stem cell

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