Variant report

Variant	rs72780684
Chromosome Location	chr10:45483044-45483045
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr10:45482947-45483250	HepG2	liver:	n/a	n/a
2	MAFF	chr10:45482968-45483185	HepG2	liver:	n/a	n/a
3	MAFK	chr10:45483000-45483207	IMR90	lung:	n/a	n/a
4	MAFK	chr10:45482987-45483157	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45430664..45432254-chr10:45480745..45483576,2	MCF-7	breast:
2	chr10:45479279..45482173-chr10:45482944..45485602,3	K562	blood:

Variant related genes	Relation type
RASSF4	TF binding region
ENSG00000107551	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4245615	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv526734	chr10:45458485-45492054	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45474400-45484000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:45474400-45490800	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr10:45474400-45490800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr10:45474800-45490200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:45475000-45485000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:45476200-45484600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:45476600-45483800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:45476800-45484600	Weak transcription	Fetal Thymus	thymus
9	chr10:45476800-45487400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:45476800-45491400	Weak transcription	Fetal Kidney	kidney
11	chr10:45477400-45487400	Weak transcription	Fetal Intestine Large	intestine
12	chr10:45477800-45488200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:45477800-45489400	Strong transcription	Duodenum Mucosa	Duodenum
14	chr10:45478000-45486400	Weak transcription	Colonic Mucosa	Colon
15	chr10:45478200-45487600	Weak transcription	Psoas Muscle	Psoas
16	chr10:45478400-45486600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:45478400-45489000	Weak transcription	NHDF-Ad	bronchial
18	chr10:45478800-45489200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr10:45478800-45495800	Weak transcription	HMEC	breast
20	chr10:45479800-45485800	Strong transcription	Brain Inferior Temporal Lobe	brain
21	chr10:45480600-45484000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr10:45480600-45485200	Strong transcription	HSMM	muscle
23	chr10:45480800-45484800	Weak transcription	Liver	Liver
24	chr10:45480800-45487400	Weak transcription	Gastric	stomach
25	chr10:45480800-45489400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:45481000-45483200	Enhancers	Aorta	Aorta
27	chr10:45481200-45483400	Weak transcription	Fetal Intestine Small	intestine
28	chr10:45481200-45484000	Weak transcription	Spleen	Spleen
29	chr10:45481200-45484600	Weak transcription	Esophagus	oesophagus
30	chr10:45481200-45484800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr10:45481200-45485200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:45481200-45485200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:45481200-45485600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:45481200-45486000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:45481200-45489200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:45481400-45483400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:45481400-45483800	Weak transcription	Pancreas	Pancrea
38	chr10:45481400-45484400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:45481400-45484800	Weak transcription	Placenta	Placenta
40	chr10:45481400-45484800	Weak transcription	Lung	lung
41	chr10:45481400-45485400	Weak transcription	Stomach Mucosa	stomach
42	chr10:45481600-45483200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr10:45481600-45484000	Strong transcription	HepG2	liver
44	chr10:45481600-45485200	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr10:45481600-45486600	Weak transcription	Brain Germinal Matrix	brain
46	chr10:45482000-45483400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr10:45482000-45483400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr10:45482000-45484000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:45482000-45484000	Strong transcription	Left Ventricle	heart
50	chr10:45482000-45484000	Weak transcription	Right Ventricle	heart

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