Variant report

Variant	rs72782212
Chromosome Location	chr10:25396005-25396006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72780387	1.00[AMR][1000 genomes]
rs72782207	1.00[AMR][1000 genomes]
rs72782213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25392200-25397000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:25392400-25414200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:25393400-25398400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:25394000-25402000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:25394600-25397200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:25395000-25400400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:25395000-25401800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:25395000-25402400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:25395000-25405000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:25395400-25396800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:25395400-25397200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:25395600-25397000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:25395800-25397200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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