Variant report

Variant	rs72782306
Chromosome Location	chr5:126320526-126320527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:126313681..126317112-chr5:126318689..126323055,6	K562	blood:
2	chr5:126317999..126320558-chr5:126321951..126325024,3	K562	blood:
3	chr5:126318646..126322262-chr5:126365005..126368351,4	K562	blood:
4	chr5:126305965..126309284-chr5:126320390..126324364,3	K562	blood:
5	chr5:126318646..126324314-chr5:126364325..126368351,7	K562	blood:

Variant related genes	Relation type
ENSG00000173926	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72780289	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv869897	chr5:126224358-126445210	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126308400-126328800	Weak transcription	Gastric	stomach
2	chr5:126309000-126331000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:126309000-126331600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:126309400-126323000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:126309400-126323200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:126309400-126323200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr5:126309400-126334000	Weak transcription	Small Intestine	intestine
8	chr5:126310000-126323400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:126312200-126320600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:126312600-126323400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr5:126312800-126320600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:126312800-126322800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:126312800-126331600	Weak transcription	HSMM	muscle
14	chr5:126314400-126323400	Enhancers	Primary B cells from peripheral blood	blood
15	chr5:126315200-126320600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr5:126316800-126320600	Enhancers	Fetal Muscle Leg	muscle
17	chr5:126316800-126321800	Enhancers	K562	blood
18	chr5:126317600-126321000	Enhancers	Left Ventricle	heart
19	chr5:126317800-126320800	Enhancers	Fetal Muscle Trunk	muscle
20	chr5:126317800-126320800	Enhancers	Psoas Muscle	Psoas
21	chr5:126318600-126322400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr5:126318800-126320800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:126318800-126323000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr5:126318800-126323800	Weak transcription	HepG2	liver
25	chr5:126319200-126320800	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr5:126319200-126322400	Weak transcription	Adipose Nuclei	Adipose
27	chr5:126319400-126322800	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr5:126319600-126320800	Enhancers	Right Ventricle	heart
29	chr5:126319600-126321000	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr5:126319800-126320800	Enhancers	H1 Cell Line	embryonic stem cell
31	chr5:126319800-126320800	Enhancers	Osteobl	bone
32	chr5:126320000-126320800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr5:126320000-126320800	Enhancers	NHDF-Ad	bronchial
34	chr5:126320000-126321000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr5:126320000-126324800	Weak transcription	Spleen	Spleen
36	chr5:126320200-126323200	Weak transcription	Right Atrium	heart
37	chr5:126320200-126324200	Enhancers	Fetal Heart	heart
38	chr5:126320400-126320600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr5:126320400-126320800	Enhancers	NH-A	brain
40	chr5:126320400-126321000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr5:126320400-126321000	Enhancers	Primary B cells from cord blood	blood

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