Variant report

Variant	rs72782992
Chromosome Location	chr2:34478611-34478612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17432557	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2080782	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2193804	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35310455	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56011587	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56081913	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72781166	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72781199	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72782923	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72782946	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72782950	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72782980	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72782986	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72783000	0.88[EUR][1000 genomes]
rs72784808	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72784814	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006001	chr2:33991364-34858721	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv535628	chr2:33991364-34858721	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv873799	chr2:33996983-34821990	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv999091	chr2:34154486-34993188	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv535629	chr2:34154486-34993188	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv873804	chr2:34156867-35047107	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv873808	chr2:34275757-34703057	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv833714	chr2:34348193-34504892	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv873810	chr2:34456200-35047107	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1010274	chr2:34468037-34738307	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv535631	chr2:34468037-34738307	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	esv3357621	chr2:34478198-34480296	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:34468200-34479200	Weak transcription	Pancreas	Pancrea
2	chr2:34473200-34479200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:34475600-34480800	Enhancers	Fetal Intestine Small	intestine
4	chr2:34477600-34479400	Weak transcription	Fetal Lung	lung
5	chr2:34478400-34479600	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr2:34478400-34480800	Enhancers	Fetal Intestine Large	intestine
7	chr2:34478600-34479800	Enhancers	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links