Variant report

Variant	rs72783609
Chromosome Location	chr5:111694307-111694308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11241160	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12187589	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12187787	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17271934	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17345175	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1896620	0.84[EUR][1000 genomes]
rs1896621	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55845736	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56293447	0.83[EUR][1000 genomes]
rs56307310	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61061658	0.84[EUR][1000 genomes]
rs6594588	0.83[EUR][1000 genomes]
rs66521031	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66537821	0.90[EUR][1000 genomes]
rs66550707	0.82[AMR][1000 genomes]
rs67033649	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6894036	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6894358	0.83[EUR][1000 genomes]
rs7714258	0.85[EUR][1000 genomes]
rs7716394	0.85[EUR][1000 genomes]
rs7722291	0.83[EUR][1000 genomes]
rs821736	0.83[EUR][1000 genomes]
rs821738	0.83[EUR][1000 genomes]
rs821739	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv948869	chr5:111476404-111695183	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv531291	chr5:111497440-111756788	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv882714	chr5:111655382-111807579	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv462386	chr5:111667572-111699317	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv599372	chr5:111667572-111699317	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111678600-111695600	Weak transcription	Pancreas	Pancrea
2	chr5:111684000-111702600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:111685200-111707000	Weak transcription	Ovary	ovary
4	chr5:111685200-111709800	Weak transcription	Aorta	Aorta
5	chr5:111689200-111702200	Weak transcription	Gastric	stomach
6	chr5:111689600-111708800	Weak transcription	Esophagus	oesophagus
7	chr5:111691400-111694600	Weak transcription	Fetal Lung	lung
8	chr5:111691800-111694600	Enhancers	Fetal Heart	heart
9	chr5:111693800-111703200	Weak transcription	Right Ventricle	heart
10	chr5:111694000-111700800	Weak transcription	Left Ventricle	heart
11	chr5:111694000-111701800	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links