Variant report

Variant	rs72784416
Chromosome Location	chr2:10083949-10083950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10077034..10079332-chr2:10081722..10084624,2	MCF-7	breast:
2	chr2:10081775..10084606-chr2:10089838..10092236,2	K562	blood:
3	chr2:9983691..9985832-chr2:10083772..10085914,3	MCF-7	breast:
4	chr2:10079779..10081937-chr2:10082992..10085179,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134317	Chromatin interaction
ENSG00000115750	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72784405	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948591	chr2:9922257-10141191	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv1843231	chr2:9979766-10141191	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1011125	chr2:9996740-10293803	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
4	nsv1011689	chr2:10023891-10293803	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv1002769	chr2:10064511-10157028	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv997334	chr2:10080327-10189279	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10073400-10084400	Weak transcription	Lung	lung
2	chr2:10073600-10088800	Weak transcription	Spleen	Spleen
3	chr2:10081200-10084400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:10081200-10085000	Weak transcription	Pancreas	Pancrea
5	chr2:10081400-10084400	Weak transcription	Hela-S3	cervix
6	chr2:10081800-10084000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:10082000-10084200	Weak transcription	Placenta	Placenta
8	chr2:10082000-10084400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:10082000-10090800	Weak transcription	HMEC	breast
10	chr2:10082200-10084400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:10082400-10084400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:10082400-10090200	Weak transcription	Gastric	stomach
13	chr2:10082600-10084400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:10082600-10084600	Weak transcription	K562	blood
15	chr2:10082600-10089000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr2:10082600-10090400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:10082800-10084400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:10082800-10084600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:10082800-10084600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:10083200-10084400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr2:10083200-10084400	Weak transcription	HepG2	liver
22	chr2:10083400-10084600	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links