Variant report
Variant | rs72784886 |
---|---|
Chromosome Location | chr5:117583617-117583618 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs55639530 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs66883731 | 1.00[EUR][1000 genomes] |
rs72778745 | 0.92[EUR][1000 genomes] |
rs72778746 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs72778764 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72778765 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72778880 | 0.83[AMR][1000 genomes] |
rs72778884 | 0.83[AMR][1000 genomes] |
rs72784848 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72784849 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72784854 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72784858 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72784902 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72786803 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72786804 | 0.83[AMR][1000 genomes] |
rs72786866 | 0.83[AMR][1000 genomes] |
rs72786883 | 0.83[AMR][1000 genomes] |
rs72786887 | 0.83[AMR][1000 genomes] |
rs72788074 | 0.83[AMR][1000 genomes] |
rs72788076 | 0.83[AMR][1000 genomes] |
rs72788078 | 0.83[AMR][1000 genomes] |
rs72788081 | 0.83[AMR][1000 genomes] |
rs72788083 | 0.83[AMR][1000 genomes] |
rs72788088 | 0.83[AMR][1000 genomes] |
rs72788089 | 0.83[AMR][1000 genomes] |
rs72789747 | 0.83[AMR][1000 genomes] |
rs72789749 | 0.83[AMR][1000 genomes] |
rs7708869 | 0.92[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1027428 | chr5:117072745-118036353 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
2 | nsv537877 | chr5:117072745-118036353 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
3 | nsv1067621 | chr5:117102544-118036352 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
4 | nsv531292 | chr5:117102544-118036352 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
5 | esv2422395 | chr5:117442806-117887910 | Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
6 | nsv882762 | chr5:117499480-117706786 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
7 | nsv599526 | chr5:117580961-117612080 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:117583000-117583800 | ZNF genes & repeats | Fetal Muscle Trunk | muscle |
2 | chr5:117583200-117583800 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
3 | chr5:117583600-117583800 | Weak transcription | Right Atrium | heart |