Variant report

Variant	rs72786821
Chromosome Location	chr5:124948054-124948055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17481479	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030992	chr5:124708549-125391503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv537892	chr5:124708549-125391503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv882828	chr5:124867823-124958205	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv534468	chr5:124943170-125634960	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124943200-124948200	Weak transcription	HUVEC	blood vessel
2	chr5:124947200-124948200	Enhancers	Fetal Brain Male	brain
3	chr5:124947800-124948200	Flanking Active TSS	HSMMtube	muscle
4	chr5:124947800-124948400	Enhancers	Fetal Muscle Leg	muscle
5	chr5:124947800-124949200	Enhancers	Fetal Kidney	kidney
6	chr5:124948000-124948200	Active TSS	Brain Substantia Nigra	brain
7	chr5:124948000-124948200	Active TSS	Psoas Muscle	Psoas
8	chr5:124948000-124948400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:124948000-124948400	Enhancers	Esophagus	oesophagus
10	chr5:124948000-124948400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr5:124948000-124948400	Flanking Active TSS	Fetal Muscle Trunk	muscle
12	chr5:124948000-124948400	Enhancers	Pancreas	Pancrea
13	chr5:124948000-124948400	Enhancers	Right Atrium	heart
14	chr5:124948000-124948400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr5:124948000-124948400	Flanking Active TSS	HSMM	muscle
16	chr5:124948000-124948600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr5:124948000-124948600	Enhancers	Brain Germinal Matrix	brain
18	chr5:124948000-124948800	Enhancers	Brain Angular Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links