Variant report

Variant	rs72787110
Chromosome Location	chr16:75379533-75379534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:75378254..75379784-chr16:75434155..75436893,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17764278	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56258397	0.88[EUR][1000 genomes]
rs7187690	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061095	chr16:74519718-75407020	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv532560	chr16:74692406-75411912	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
3	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
4	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
5	nsv833283	chr16:75302175-75392308	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2762265	chr16:75368897-75415866	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1065995	chr16:75373756-75626027	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75338800-75426400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr16:75339400-75411800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr16:75342200-75381200	Weak transcription	Esophagus	oesophagus
4	chr16:75352200-75396000	Weak transcription	Lung	lung
5	chr16:75354800-75413600	Weak transcription	Fetal Thymus	thymus
6	chr16:75355400-75379800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr16:75358400-75421400	Weak transcription	K562	blood
8	chr16:75365200-75392400	Weak transcription	Brain Angular Gyrus	brain
9	chr16:75368600-75379600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr16:75368600-75396600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr16:75368600-75411400	Weak transcription	GM12878-XiMat	blood
12	chr16:75368600-75412800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr16:75368800-75409800	Weak transcription	Thymus	Thymus
14	chr16:75368800-75413200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr16:75369200-75406000	Weak transcription	Dnd41	blood
16	chr16:75371400-75381000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr16:75374400-75380200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr16:75374600-75380800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr16:75375200-75400000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr16:75375400-75379600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr16:75375400-75384600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr16:75375800-75380200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr16:75375800-75380600	Weak transcription	Fetal Brain Male	brain
24	chr16:75375800-75408400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr16:75376000-75380200	Enhancers	HUVEC	blood vessel
26	chr16:75376600-75396600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr16:75376600-75410600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr16:75376600-75426800	Weak transcription	Brain Germinal Matrix	brain
29	chr16:75376800-75382800	Weak transcription	Aorta	Aorta
30	chr16:75377000-75383000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr16:75377000-75384600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr16:75377000-75385200	Weak transcription	Spleen	Spleen
33	chr16:75377000-75391200	Weak transcription	Ovary	ovary
34	chr16:75377000-75396400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr16:75377000-75396400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr16:75377000-75399200	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr16:75377000-75399200	Weak transcription	Fetal Intestine Large	intestine
38	chr16:75377000-75411600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr16:75377000-75411800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr16:75377000-75424400	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr16:75377000-75426400	Weak transcription	Gastric	stomach
42	chr16:75377200-75385000	Weak transcription	A549	lung
43	chr16:75377200-75424000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr16:75377400-75380600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr16:75377400-75426400	Weak transcription	Pancreas	Pancrea
46	chr16:75377600-75384200	Weak transcription	HMEC	breast
47	chr16:75377600-75384800	Weak transcription	HSMM	muscle
48	chr16:75377600-75384800	Weak transcription	NHDF-Ad	bronchial
49	chr16:75377600-75395800	Weak transcription	Adipose Nuclei	Adipose
50	chr16:75377600-75400000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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