Variant report

Variant	rs72787277
Chromosome Location	chr10:49891101-49891102
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56267743	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61838414	0.92[ASN][1000 genomes]
rs72787268	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72787272	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72787275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787278	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49889400-49892200	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:49889600-49891600	Enhancers	Primary B cells from cord blood	blood
3	chr10:49890200-49892600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:49890400-49891400	Enhancers	GM12878-XiMat	blood
5	chr10:49890600-49891200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:49890600-49891200	Weak transcription	Fetal Thymus	thymus
7	chr10:49890600-49892000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:49890600-49892400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:49890600-49893000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:49890800-49892000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:49890800-49892600	Weak transcription	Spleen	Spleen
12	chr10:49891000-49892200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:49891000-49892400	Weak transcription	Esophagus	oesophagus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links