Variant report

Variant	rs72788357
Chromosome Location	chr2:10337745-10337746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:10337512-10337817	K562	blood:	n/a	n/a
2	REST	chr2:10337736-10338160	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
MIR4261	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11886995	0.83[ASN][1000 genomes]
rs13389178	0.83[ASN][1000 genomes]
rs16855939	0.83[ASN][1000 genomes]
rs4669546	0.83[ASN][1000 genomes]
rs55800275	0.83[ASN][1000 genomes]
rs55969366	0.84[AMR][1000 genomes]
rs55983661	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56051374	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60070538	0.83[ASN][1000 genomes]
rs72786680	0.83[ASN][1000 genomes]
rs72786683	0.83[ASN][1000 genomes]
rs72786685	0.83[ASN][1000 genomes]
rs72788345	0.83[ASN][1000 genomes]
rs72788356	0.83[ASN][1000 genomes]
rs7569024	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873635	chr2:10286466-10344465	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv818977	chr2:10333767-10393038	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10290200-10351400	Strong transcription	Dnd41	blood
2	chr2:10304400-10339800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:10313000-10344400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:10314000-10340400	Weak transcription	HepG2	liver
5	chr2:10321800-10338000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:10325600-10342800	Weak transcription	Fetal Brain Female	brain
7	chr2:10326600-10339400	Strong transcription	Thymus	Thymus
8	chr2:10333000-10347000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr2:10335200-10338000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:10335200-10348600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr2:10336400-10338000	Weak transcription	Fetal Intestine Small	intestine
12	chr2:10336400-10338600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:10336400-10338800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr2:10336600-10338200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr2:10336800-10338200	Weak transcription	Fetal Thymus	thymus
16	chr2:10336800-10344600	Weak transcription	Brain Hippocampus Middle	brain
17	chr2:10337200-10337800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr2:10337200-10338000	Weak transcription	Fetal Muscle Leg	muscle
19	chr2:10337200-10338800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:10337200-10342800	Weak transcription	Gastric	stomach
21	chr2:10337200-10349600	Weak transcription	Spleen	Spleen
22	chr2:10337600-10342800	Weak transcription	Fetal Brain Male	brain

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