Variant report

Variant	rs72789080
Chromosome Location	chr10:50377816-50377817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:50376964-50379372	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:50338839..50340427-chr10:50376462..50378560,2	K562	blood:
2	chr10:50376651..50379142-chr10:50381763..50383649,2	MCF-7	breast:
3	chr10:50376986..50378609-chr10:50649744..50651324,2	K562	blood:
4	chr10:50376958..50379647-chr10:50506867..50509993,3	K562	blood:
5	chr10:50376646..50379647-chr10:50506865..50509993,4	K562	blood:

No data

Variant related genes	Relation type
C10orf128	TF binding region
ENSG00000236208	Chromatin interaction
ENSG00000177354	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11818301	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72783191	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50359000-50382200	Weak transcription	Left Ventricle	heart
2	chr10:50362400-50380600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:50366200-50378200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:50367600-50384600	Weak transcription	Dnd41	blood
5	chr10:50368200-50380800	Weak transcription	Esophagus	oesophagus
6	chr10:50369600-50380400	Weak transcription	Gastric	stomach
7	chr10:50372000-50384000	Weak transcription	Colonic Mucosa	Colon
8	chr10:50372800-50386200	Weak transcription	Pancreas	Pancrea
9	chr10:50373200-50385200	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:50373600-50383000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:50374800-50379000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:50375000-50384000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:50375400-50382600	Weak transcription	Lung	lung
14	chr10:50375800-50380600	Weak transcription	Brain Substantia Nigra	brain
15	chr10:50375800-50380600	Weak transcription	Right Atrium	heart
16	chr10:50376000-50378000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr10:50376000-50378400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr10:50376000-50379200	Weak transcription	Spleen	Spleen
19	chr10:50376200-50378000	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr10:50376400-50378000	Weak transcription	Fetal Muscle Leg	muscle
21	chr10:50376400-50378200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:50376400-50378600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:50376400-50381800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr10:50376800-50395200	Enhancers	Primary B cells from peripheral blood	blood
25	chr10:50377000-50380600	Weak transcription	Adipose Nuclei	Adipose
26	chr10:50377200-50379800	Weak transcription	Right Ventricle	heart
27	chr10:50377400-50379200	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr10:50377400-50379200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:50377400-50379600	Weak transcription	HSMMtube	muscle
30	chr10:50377400-50381000	Enhancers	K562	blood
31	chr10:50377400-50382200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:50377600-50378000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr10:50377600-50378400	Enhancers	Brain Hippocampus Middle	brain
34	chr10:50377600-50379600	Weak transcription	Primary B cells from cord blood	blood
35	chr10:50377600-50380600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr10:50377800-50384000	Weak transcription	NHDF-Ad	bronchial

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