Variant report

Variant	rs72789924
Chromosome Location	chr5:111869153-111869154
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:111496398..111498686-chr5:111868058..111870036,2	MCF-7	breast:
2	chr5:111868244..111870833-chr5:111871300..111873976,2	K562	blood:
3	chr5:111868244..111870833-chr5:111871300..111873976,3	K562	blood:

Variant related genes	Relation type
ENSG00000224032	Chromatin interaction
ENSG00000238363	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11241168	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241169	0.80[ASN][1000 genomes]
rs11241170	0.83[ASN][1000 genomes]
rs11948057	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11948701	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12659548	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57909030	0.83[AFR][1000 genomes]
rs58636222	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv882715	chr5:111836278-111894491	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv882716	chr5:111848890-111894491	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111865600-111869800	Weak transcription	K562	blood
2	chr5:111867800-111870800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:111868000-111869600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:111868000-111870400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr5:111868200-111869400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:111868200-111869600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr5:111868200-111869800	Enhancers	Primary B cells from cord blood	blood
8	chr5:111868200-111870000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:111868200-111870200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:111868400-111869600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:111868400-111869600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:111868400-111870200	Enhancers	Spleen	Spleen
13	chr5:111868400-111870400	Enhancers	Adipose Nuclei	Adipose
14	chr5:111868600-111869400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr5:111868600-111869400	Flanking Active TSS	GM12878-XiMat	blood
16	chr5:111868600-111871200	Enhancers	Primary B cells from peripheral blood	blood
17	chr5:111868800-111869400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr5:111868800-111871200	Enhancers	Stomach Mucosa	stomach
19	chr5:111869000-111869200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr5:111869000-111869400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr5:111869000-111869600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:111869000-111870000	Enhancers	H1 Cell Line	embryonic stem cell
23	chr5:111869000-111870000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:111869000-111870000	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr5:111869000-111870200	Enhancers	Gastric	stomach

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