The 2.0 version of rSNPBase

Variant report

Variant rs72790587
Chromosome Location chr5:108388541-108388542
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:108350800-108390400 Weak transcription HSMMtube muscle
2 chr5:108356000-108399000 Weak transcription HSMM muscle
3 chr5:108356400-108389200 Weak transcription Primary B cells from cord blood blood
4 chr5:108360400-108389000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr5:108360400-108389400 Weak transcription Cortex derived primary cultured neurospheres brain
6 chr5:108360400-108389600 Weak transcription Brain Angular Gyrus brain
7 chr5:108360400-108389800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr5:108360400-108389800 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr5:108360400-108400400 Weak transcription NHEK skin
10 chr5:108360400-108404800 Weak transcription Colon Smooth Muscle Colon
11 chr5:108360400-108425200 Weak transcription Aorta Aorta
12 chr5:108365600-108389400 Weak transcription HepG2 liver
13 chr5:108372600-108389800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
14 chr5:108374000-108388600 Weak transcription Fetal Kidney kidney
15 chr5:108374000-108388800 Weak transcription Primary hematopoietic stem cells short term culture blood
16 chr5:108374800-108390000 Weak transcription Muscle Satellite Cultured Cells --
17 chr5:108376000-108390000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr5:108376400-108389000 Weak transcription Primary T cells from cord blood blood
19 chr5:108376400-108392600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr5:108377000-108399000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
21 chr5:108377400-108389000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr5:108380000-108389200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
23 chr5:108380000-108391200 Weak transcription Primary hematopoietic stem cells blood
24 chr5:108380400-108389000 Weak transcription Primary T helper cells fromperipheralblood blood
25 chr5:108381000-108389400 Weak transcription Monocytes-CD14+_RO01746 blood
26 chr5:108381400-108389800 Weak transcription Brain Cingulate Gyrus brain
27 chr5:108381800-108388600 Weak transcription Primary B cells from peripheral blood blood
28 chr5:108382000-108389800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr5:108382400-108389000 Strong transcription Breast Myoepithelial Primary Cells Breast
30 chr5:108383600-108389600 Weak transcription H9 Cell Line embryonic stem cell
31 chr5:108386200-108389000 Weak transcription Pancreatic Islets Pancreatic Islet
32 chr5:108386200-108389800 Weak transcription Osteobl bone
33 chr5:108386200-108390000 Weak transcription NHDF-Ad bronchial
34 chr5:108386200-108390400 Weak transcription Fetal Intestine Large intestine
35 chr5:108386400-108390000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr5:108386600-108389000 Weak transcription Brain Hippocampus Middle brain
37 chr5:108387000-108388800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr5:108387000-108389200 Weak transcription Placenta Amnion Placenta Amnion
39 chr5:108387200-108388800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr5:108387400-108389600 Weak transcription GM12878-XiMat blood
41 chr5:108387600-108388800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr5:108387600-108389600 Weak transcription Fetal Brain Female brain
43 chr5:108387600-108395200 Weak transcription Fetal Stomach stomach
44 chr5:108387800-108394800 Weak transcription Left Ventricle heart
45 chr5:108388000-108389600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
46 chr5:108388000-108389600 Weak transcription Right Ventricle heart
47 chr5:108388000-108390400 Weak transcription Fetal Lung lung
48 chr5:108388000-108396600 Weak transcription Adipose Nuclei Adipose
49 chr5:108388000-108401200 Weak transcription Gastric stomach
50 chr5:108388200-108389600 Weak transcription Liver Liver

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Last update: Aug 31, 2015