Variant report

Variant	rs72791834
Chromosome Location	chr5:106895347-106895348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106895105..106896726-chr5:106898607..106901485,2	MCF-7	breast:
2	chr5:106892845..106895575-chr5:106898409..106900796,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11950725	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11957374	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs163888	0.88[ASN][1000 genomes]
rs17160159	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17414033	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1966892	0.81[EUR][1000 genomes]
rs1966893	0.81[EUR][1000 genomes]
rs55837064	0.84[ASN][1000 genomes]
rs56195302	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6882355	0.84[ASN][1000 genomes]
rs6883713	0.84[ASN][1000 genomes]
rs6884705	0.84[ASN][1000 genomes]
rs712560	0.84[ASN][1000 genomes]
rs72789671	0.84[ASN][1000 genomes]
rs72791831	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7443170	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106879000-106899200	Weak transcription	Fetal Stomach	stomach
2	chr5:106881600-106899600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:106884600-106896400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:106885600-106896400	Weak transcription	Right Atrium	heart
5	chr5:106887200-106899400	Weak transcription	Fetal Lung	lung
6	chr5:106887200-106906800	Weak transcription	Right Ventricle	heart
7	chr5:106889400-106903000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:106890000-106898000	Enhancers	Fetal Heart	heart
9	chr5:106890200-106900800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr5:106891000-106899800	Weak transcription	Aorta	Aorta
11	chr5:106892000-106901800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:106892200-106895600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr5:106892600-106895400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:106892600-106895400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr5:106892800-106895600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:106892800-106895600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:106892800-106895800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:106892800-106895800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr5:106892800-106899800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:106893000-106896400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:106893200-106901800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr5:106893400-106895400	Weak transcription	NHLF	lung
23	chr5:106893400-106901600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr5:106893600-106898200	Enhancers	A549	lung
25	chr5:106893800-106906000	Weak transcription	NHDF-Ad	bronchial
26	chr5:106894000-106902000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:106894800-106895400	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr5:106894800-106900000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr5:106895000-106896200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr5:106895000-106897600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr5:106895000-106899200	Weak transcription	Left Ventricle	heart
32	chr5:106895000-106899400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr5:106895000-106899600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr5:106895000-106901600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr5:106895000-106901600	Weak transcription	HMEC	breast
36	chr5:106895000-106901800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr5:106895000-106906800	Weak transcription	Lung	lung
38	chr5:106895200-106896200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr5:106895200-106896200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr5:106895200-106899400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr5:106895200-106899600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr5:106895200-106899600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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