Variant report

Variant	rs72792155
Chromosome Location	chr16:83030461-83030462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1108698	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16959005	0.88[EUR][1000 genomes]
rs16959008	0.88[EUR][1000 genomes]
rs17745108	0.84[EUR][1000 genomes]
rs56387206	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56907994	0.88[EUR][1000 genomes]
rs6565098	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72792121	0.81[EUR][1000 genomes]
rs72792126	0.86[EUR][1000 genomes]
rs72792134	0.88[EUR][1000 genomes]
rs72792137	0.88[EUR][1000 genomes]
rs72792141	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72792142	0.93[EUR][1000 genomes]
rs72792145	0.93[EUR][1000 genomes]
rs72792147	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792148	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72792149	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792150	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792154	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72792158	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792160	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72792161	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72792163	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72792164	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72792167	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72792168	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs72792170	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs72792172	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs72792173	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs72794129	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72794130	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72794131	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72794133	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72794134	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72794135	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72794137	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72794139	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72794141	0.95[EUR][1000 genomes]
rs72794143	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72794145	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72794146	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72794147	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72794152	0.84[AFR][1000 genomes]
rs72794153	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72794155	0.85[AFR][1000 genomes]
rs72794156	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72794158	0.88[AFR][1000 genomes]
rs72794159	0.88[AFR][1000 genomes]
rs7499717	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7499722	0.85[AFR][1000 genomes]
rs7499882	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7500702	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv907029	chr16:82951179-83044665	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv907030	chr16:82959437-83044665	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1056005	chr16:82987872-83055420	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1055246	chr16:82988025-83056132	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1064172	chr16:82988932-83046695	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv522570	chr16:82988977-83044665	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv573383	chr16:82988977-83044665	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv573384	chr16:82994130-83044665	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3324286	chr16:83028451-83032749	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:83021600-83035200	Weak transcription	Psoas Muscle	Psoas
2	chr16:83021800-83035000	Weak transcription	Aorta	Aorta
3	chr16:83029000-83030600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr16:83029400-83030600	Enhancers	HSMMtube	muscle
5	chr16:83029400-83030800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr16:83029600-83030600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr16:83029600-83030600	Enhancers	HMEC	breast
8	chr16:83029800-83032200	Weak transcription	Fetal Intestine Large	intestine
9	chr16:83029800-83035800	Weak transcription	Right Atrium	heart
10	chr16:83029800-83038200	Weak transcription	Right Ventricle	heart
11	chr16:83030000-83030600	Enhancers	NHDF-Ad	bronchial
12	chr16:83030000-83030800	Enhancers	Lung	lung
13	chr16:83030200-83030600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr16:83030200-83030600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr16:83030200-83030600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr16:83030200-83030800	Enhancers	Osteobl	bone
17	chr16:83030200-83032400	Enhancers	HUVEC	blood vessel
18	chr16:83030200-83035800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr16:83030200-83037000	Weak transcription	NHEK	skin
20	chr16:83030200-83047200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr16:83030200-83053200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr16:83030400-83030800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr16:83030400-83030800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr16:83030400-83030800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr16:83030400-83030800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
26	chr16:83030400-83030800	Enhancers	Esophagus	oesophagus
27	chr16:83030400-83030800	Enhancers	Gastric	stomach
28	chr16:83030400-83030800	Enhancers	Left Ventricle	heart
29	chr16:83030400-83030800	Enhancers	Spleen	Spleen
30	chr16:83030400-83031000	Active TSS	Fetal Lung	lung
31	chr16:83030400-83031000	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr16:83030400-83032200	Weak transcription	Fetal Intestine Small	intestine
33	chr16:83030400-83032400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr16:83030400-83032600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr16:83030400-83036000	Weak transcription	HSMM	muscle

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