Variant report

Variant	rs72793759
Chromosome Location	chr10:38388577-38388578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2384732	0.84[EUR][1000 genomes]
rs60793652	0.99[EUR][1000 genomes]
rs66899031	0.99[EUR][1000 genomes]
rs67022688	0.94[EUR][1000 genomes]
rs72793785	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72793786	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7913645	0.94[EUR][1000 genomes]
rs9417290	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv550419	chr10:38311777-38501654	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv6465	chr10:38377662-38422125	Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38384200-38389000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:38384200-38389200	Weak transcription	Aorta	Aorta
3	chr10:38384400-38388800	Weak transcription	Fetal Intestine Small	intestine
4	chr10:38384400-38389200	Weak transcription	Small Intestine	intestine
5	chr10:38384400-38389400	Weak transcription	Thymus	Thymus
6	chr10:38384400-38396400	Weak transcription	HUVEC	blood vessel
7	chr10:38384600-38388600	Strong transcription	Fetal Muscle Trunk	muscle
8	chr10:38384600-38388600	ZNF genes & repeats	A549	lung
9	chr10:38384600-38388600	Strong transcription	NH-A	brain
10	chr10:38384600-38388800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:38384600-38389200	Weak transcription	Esophagus	oesophagus
12	chr10:38384600-38390600	Weak transcription	Fetal Heart	heart
13	chr10:38384600-38390800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:38384600-38390800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:38384600-38391200	Weak transcription	Colonic Mucosa	Colon
16	chr10:38384600-38391400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:38384600-38391400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr10:38384600-38391400	Strong transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:38384600-38391800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:38384600-38392800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:38384600-38392800	Weak transcription	Gastric	stomach
22	chr10:38384800-38388600	Strong transcription	Brain Substantia Nigra	brain
23	chr10:38384800-38388600	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:38384800-38388600	ZNF genes & repeats	GM12878-XiMat	blood
25	chr10:38384800-38388600	Strong transcription	K562	blood
26	chr10:38384800-38388600	Strong transcription	NHDF-Ad	bronchial
27	chr10:38384800-38389000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:38384800-38389000	Strong transcription	Brain Inferior Temporal Lobe	brain
29	chr10:38384800-38389200	Strong transcription	Duodenum Mucosa	Duodenum
30	chr10:38384800-38390200	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr10:38384800-38390600	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:38384800-38390800	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr10:38384800-38391000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:38384800-38391000	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr10:38384800-38391600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr10:38384800-38392800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr10:38384800-38392800	Weak transcription	Spleen	Spleen
38	chr10:38385000-38388800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:38385000-38389800	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr10:38385000-38392800	Weak transcription	Pancreas	Pancrea
41	chr10:38385200-38388600	Strong transcription	Primary B cells from peripheral blood	blood
42	chr10:38385200-38388600	Strong transcription	HSMM	muscle
43	chr10:38385200-38388800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:38385200-38389200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr10:38385200-38389600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr10:38385200-38391000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:38385200-38391600	Strong transcription	Primary B cells from cord blood	blood
48	chr10:38385400-38388600	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr10:38385400-38388600	Strong transcription	Colon Smooth Muscle	Colon
50	chr10:38385400-38388800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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