Variant report

Variant	rs72793763
Chromosome Location	chr10:38393667-38393668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72793747	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs72793777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72793782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv550419	chr10:38311777-38501654	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv6465	chr10:38377662-38422125	Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38384400-38396400	Weak transcription	HUVEC	blood vessel
2	chr10:38385400-38394400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:38385600-38396200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:38386000-38395200	Weak transcription	Hela-S3	cervix
5	chr10:38386200-38396000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr10:38386800-38395800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:38386800-38396200	ZNF genes & repeats	Fetal Brain Female	brain
8	chr10:38386800-38396200	ZNF genes & repeats	Fetal Lung	lung
9	chr10:38387600-38398800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:38387800-38396800	ZNF genes & repeats	Liver	Liver
11	chr10:38388200-38396200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:38388200-38399200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
13	chr10:38388600-38394800	Weak transcription	NHDF-Ad	bronchial
14	chr10:38388600-38397600	Weak transcription	NH-A	brain
15	chr10:38389200-38395800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
16	chr10:38389200-38396000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
17	chr10:38389600-38395800	ZNF genes & repeats	Dnd41	blood
18	chr10:38389800-38393800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
19	chr10:38390000-38395800	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr10:38390400-38393800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
21	chr10:38390600-38394000	ZNF genes & repeats	Fetal Intestine Large	intestine
22	chr10:38390600-38395600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
23	chr10:38390600-38396000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
24	chr10:38390800-38393800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:38390800-38395600	ZNF genes & repeats	Colon Smooth Muscle	Colon
26	chr10:38391000-38393800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
27	chr10:38391000-38393800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:38391000-38395600	ZNF genes & repeats	A549	lung
29	chr10:38391000-38396000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:38391000-38396200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:38391200-38393800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
32	chr10:38391200-38393800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
33	chr10:38391200-38395000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:38391200-38395600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
35	chr10:38391200-38395600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
36	chr10:38391200-38396000	ZNF genes & repeats	Fetal Kidney	kidney
37	chr10:38391200-38396400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
38	chr10:38391600-38395600	ZNF genes & repeats	Fetal Brain Male	brain
39	chr10:38391600-38395800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:38391600-38396000	ZNF genes & repeats	Primary B cells from cord blood	blood
41	chr10:38391800-38393800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
42	chr10:38391800-38394600	Weak transcription	Osteobl	bone
43	chr10:38391800-38395600	ZNF genes & repeats	Primary T cells from cord blood	blood
44	chr10:38392000-38394800	Weak transcription	HepG2	liver
45	chr10:38392200-38395600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr10:38392200-38395600	ZNF genes & repeats	Fetal Muscle Leg	muscle
47	chr10:38392400-38395600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
48	chr10:38392400-38395800	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr10:38392400-38396000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:38392600-38393800	ZNF genes & repeats	Fetal Muscle Trunk	muscle

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