Variant report

Variant	rs72793987
Chromosome Location	chr5:111911105-111911106
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55731472	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56118038	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56139146	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72791176	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72791177	0.84[AMR][1000 genomes]
rs72793998	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111908400-111911600	Weak transcription	Right Atrium	heart
2	chr5:111909000-111912400	Enhancers	Fetal Heart	heart
3	chr5:111909400-111913800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:111909800-111913000	Enhancers	Fetal Stomach	stomach
5	chr5:111910600-111911600	Weak transcription	Brain Anterior Caudate	brain
6	chr5:111910800-111911200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:111910800-111911200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr5:111910800-111913600	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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