Variant report

Variant	rs72796259
Chromosome Location	chr16:83114119-83114120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10438637	1.00[ASN][1000 genomes]
rs10438638	1.00[ASN][1000 genomes]
rs11648768	0.95[ASN][1000 genomes]
rs28727330	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935907	0.95[ASN][1000 genomes]
rs4133123	1.00[ASN][1000 genomes]
rs4395062	1.00[ASN][1000 genomes]
rs4411488	1.00[ASN][1000 genomes]
rs4644854	1.00[ASN][1000 genomes]
rs4783313	0.84[EUR][1000 genomes]
rs55672374	0.90[EUR][1000 genomes]
rs55788756	1.00[ASN][1000 genomes]
rs55851998	1.00[ASN][1000 genomes]
rs56399809	1.00[ASN][1000 genomes]
rs56795002	0.87[EUR][1000 genomes]
rs57032160	1.00[ASN][1000 genomes]
rs57761118	1.00[ASN][1000 genomes]
rs58993171	0.95[ASN][1000 genomes]
rs59132467	0.89[ASN][1000 genomes]
rs59140285	1.00[ASN][1000 genomes]
rs6565120	1.00[ASN][1000 genomes]
rs7187957	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7190151	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7192118	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7204440	1.00[ASN][1000 genomes]
rs72796217	0.90[EUR][1000 genomes]
rs72796218	0.90[EUR][1000 genomes]
rs72796239	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72796246	0.95[ASN][1000 genomes]
rs72796247	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72796250	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72796254	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72796260	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72796266	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72796273	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72796295	1.00[ASN][1000 genomes]
rs72796300	1.00[ASN][1000 genomes]
rs74030401	0.95[ASN][1000 genomes]
rs74033124	1.00[ASN][1000 genomes]
rs8043791	1.00[ASN][1000 genomes]
rs8045051	1.00[ASN][1000 genomes]
rs8045075	1.00[ASN][1000 genomes]
rs8045987	1.00[ASN][1000 genomes]
rs8048117	1.00[ASN][1000 genomes]
rs8049830	0.86[ASN][1000 genomes]
rs8060225	1.00[ASN][1000 genomes]
rs9922279	1.00[ASN][1000 genomes]
rs9930517	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv573386	chr16:83091463-83170417	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv457582	chr16:83103233-83148925	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv573387	chr16:83103233-83148925	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1060245	chr16:83105024-83146684	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv833306	chr16:83113899-83298775	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:83090200-83129000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr16:83092400-83129600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:83097600-83129200	Weak transcription	HMEC	breast
4	chr16:83106800-83129600	Weak transcription	HSMM	muscle
5	chr16:83107000-83115200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr16:83107000-83129400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr16:83111200-83116600	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links