Variant report

Variant	rs72797023
Chromosome Location	chr10:55849612-55849613
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11004027	0.89[EUR][1000 genomes]
rs11004028	0.91[EUR][1000 genomes]
rs11004029	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11004030	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11004031	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11004032	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11004058	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11004060	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594638	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12243005	0.85[EUR][1000 genomes]
rs12244555	0.83[EUR][1000 genomes]
rs12244759	0.83[EUR][1000 genomes]
rs12250607	0.85[EUR][1000 genomes]
rs12250681	0.84[EUR][1000 genomes]
rs12251985	0.84[EUR][1000 genomes]
rs12252125	0.85[EUR][1000 genomes]
rs12252197	0.85[EUR][1000 genomes]
rs12253866	0.84[EUR][1000 genomes]
rs12257312	0.85[EUR][1000 genomes]
rs12257494	0.89[EUR][1000 genomes]
rs12258948	0.84[EUR][1000 genomes]
rs17644196	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1911379	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28701623	0.85[EUR][1000 genomes]
rs3812657	0.91[EUR][1000 genomes]
rs72794984	0.86[EUR][1000 genomes]
rs72797006	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797007	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797008	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72797009	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797010	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797011	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797012	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797015	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797020	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797021	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1035173	chr10:55847066-56005288	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55849000-55849800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:55849400-55849800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links