Variant report

Variant	rs72798200
Chromosome Location	chr2:30873208-30873209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:30869127..30871765-chr2:30871926..30874749,3	K562	blood:
2	chr2:30864804..30866571-chr2:30870628..30873251,2	MCF-7	breast:
3	chr2:30873034..30877433-chr2:30878993..30882629,5	MCF-7	breast:
4	chr2:30872918..30875377-chr2:30876249..30879009,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17009938	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2602777	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3816591	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4416262	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6548025	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6548026	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6548027	0.90[ASN][1000 genomes]
rs7565342	0.90[ASN][1000 genomes]
rs7583600	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7583770	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7585111	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8179733	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv581266	chr2:30864789-30874229	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30845600-30877800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:30845800-30877800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:30850200-30874600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:30850400-30874600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:30860400-30878200	Weak transcription	NHLF	lung
6	chr2:30861400-30876800	Weak transcription	Fetal Heart	heart
7	chr2:30863600-30882200	Weak transcription	Ovary	ovary
8	chr2:30864000-30874800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:30864800-30875200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:30864800-30876600	Weak transcription	Osteobl	bone
11	chr2:30865000-30875200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:30865200-30877000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:30865200-30878200	Weak transcription	A549	lung
14	chr2:30869200-30878000	Weak transcription	Psoas Muscle	Psoas
15	chr2:30871400-30873600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:30872200-30873600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:30872200-30876600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr2:30872400-30878200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:30872400-30878200	Weak transcription	Left Ventricle	heart
20	chr2:30872600-30876400	Weak transcription	NHDF-Ad	bronchial
21	chr2:30872600-30876600	Weak transcription	Right Ventricle	heart
22	chr2:30872600-30877600	Weak transcription	HSMMtube	muscle
23	chr2:30873000-30873800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr2:30873000-30874400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:30873000-30876400	Weak transcription	Fetal Muscle Leg	muscle
26	chr2:30873000-30876800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr2:30873200-30873600	Enhancers	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links