Variant report

Variant	rs72798662
Chromosome Location	chr16:74981904-74981905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs72798664	1.00[EUR][1000 genomes]
rs72798665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72798696	1.00[AMR][1000 genomes]
rs72800338	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949374	chr16:74466960-75172358	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv1061095	chr16:74519718-75407020	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
3	nsv532560	chr16:74692406-75411912	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
4	nsv1058900	chr16:74753819-75005050	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	nsv542958	chr16:74753819-75005050	Weak transcription Bivalent Enhancer Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	esv3345041	chr16:74756263-75066969	Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
7	nsv431516	chr16:74840166-75099566	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
9	nsv833280	chr16:74855811-75077227	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv1059764	chr16:74868327-74989488	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv1064546	chr16:74868795-74989488	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv526213	chr16:74873513-74990061	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv572978	chr16:74873574-74990004	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv1063842	chr16:74896749-74990601	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv542959	chr16:74896749-74990601	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:74906200-74993200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:74948400-74985800	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr16:74956200-74988600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr16:74957000-74991600	Weak transcription	Stomach Mucosa	stomach
5	chr16:74960800-74995200	Strong transcription	Fetal Intestine Small	intestine
6	chr16:74960800-74995200	Strong transcription	Fetal Stomach	stomach
7	chr16:74961400-74991600	Strong transcription	Liver	Liver
8	chr16:74962200-74986200	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr16:74962200-74993200	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr16:74964000-74988600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr16:74966400-74986400	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr16:74967200-74982000	Weak transcription	HUVEC	blood vessel
13	chr16:74967800-74991000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr16:74968400-75000200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr16:74968800-74986400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr16:74970200-74991800	Strong transcription	Fetal Thymus	thymus
17	chr16:74970400-74986000	Strong transcription	Primary T cells from cord blood	blood
18	chr16:74970800-74985800	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr16:74970800-74986000	Strong transcription	Duodenum Mucosa	Duodenum
20	chr16:74970800-74986200	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr16:74970800-74986200	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr16:74970800-74987000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr16:74970800-74993400	Strong transcription	Fetal Muscle Trunk	muscle
24	chr16:74970800-74999600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr16:74971000-74985800	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr16:74971000-74986000	Strong transcription	Fetal Intestine Large	intestine
27	chr16:74971200-74985000	Weak transcription	NHLF	lung
28	chr16:74971400-74982000	Strong transcription	HepG2	liver
29	chr16:74971400-74986000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr16:74971600-74993600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr16:74971800-74985600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr16:74972000-74995200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr16:74972200-74984400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr16:74973800-74990800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr16:74974200-74993600	Strong transcription	Placenta	Placenta
36	chr16:74974400-74985800	Strong transcription	Stomach Smooth Muscle	stomach
37	chr16:74974600-74982400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr16:74974600-74985800	Strong transcription	Adipose Nuclei	Adipose
39	chr16:74974800-74982600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr16:74974800-74985800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr16:74974800-74987000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr16:74974800-74995200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr16:74975000-74982600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr16:74975200-74982800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr16:74975200-74987400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr16:74975600-74983800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr16:74975600-74985400	Strong transcription	Colon Smooth Muscle	Colon
48	chr16:74975600-74985600	Strong transcription	Fetal Brain Female	brain
49	chr16:74975600-74985800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr16:74975600-74986200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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