Variant report

Variant	rs72798674
Chromosome Location	chr16:74999522-74999523
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72800346	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949374	chr16:74466960-75172358	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv1061095	chr16:74519718-75407020	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
3	nsv532560	chr16:74692406-75411912	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
4	nsv1058900	chr16:74753819-75005050	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	nsv542958	chr16:74753819-75005050	Weak transcription Bivalent Enhancer Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	esv3345041	chr16:74756263-75066969	Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
7	nsv431516	chr16:74840166-75099566	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
9	nsv833280	chr16:74855811-75077227	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv1066130	chr16:74983759-75231161	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:74968400-75000200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr16:74970800-74999600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr16:74976200-75012200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr16:74977600-75016400	Weak transcription	Fetal Heart	heart
5	chr16:74982600-75010400	Weak transcription	Small Intestine	intestine
6	chr16:74982600-75018200	Weak transcription	HUVEC	blood vessel
7	chr16:74985400-75016600	Weak transcription	Colon Smooth Muscle	Colon
8	chr16:74985400-75018200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr16:74985400-75018200	Weak transcription	Colonic Mucosa	Colon
10	chr16:74985600-75017400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr16:74985800-75018200	Weak transcription	NHLF	lung
12	chr16:74986000-75016800	Weak transcription	Hela-S3	cervix
13	chr16:74986200-75017400	Weak transcription	Pancreas	Pancrea
14	chr16:74986200-75017400	Weak transcription	Right Ventricle	heart
15	chr16:74989200-75016200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr16:74989400-75016200	Weak transcription	Brain Hippocampus Middle	brain
17	chr16:74989400-75016400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr16:74989600-75016200	Weak transcription	Brain Anterior Caudate	brain
19	chr16:74989600-75016600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr16:74989800-75018200	Weak transcription	Psoas Muscle	Psoas
21	chr16:74990200-75017400	Weak transcription	Fetal Brain Male	brain
22	chr16:74990400-75016200	Weak transcription	K562	blood
23	chr16:74990400-75018400	Weak transcription	Aorta	Aorta
24	chr16:74990600-75010400	Weak transcription	HSMMtube	muscle
25	chr16:74990600-75010800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr16:74990600-75018200	Weak transcription	NH-A	brain
27	chr16:74990600-75018400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr16:74990800-75000600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr16:74990800-75001000	Weak transcription	Brain Angular Gyrus	brain
30	chr16:74990800-75008400	Weak transcription	Gastric	stomach
31	chr16:74990800-75010400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr16:74990800-75016200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr16:74990800-75018200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr16:74990800-75018200	Weak transcription	HMEC	breast
35	chr16:74990800-75018200	Weak transcription	NHDF-Ad	bronchial
36	chr16:74990800-75018200	Weak transcription	Osteobl	bone
37	chr16:74991000-75016200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr16:74991000-75016400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr16:74991200-75012400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr16:74992000-75016200	Weak transcription	HSMM	muscle
41	chr16:74992200-75010600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr16:74992200-75011600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr16:74992200-75012400	Weak transcription	NHEK	skin
44	chr16:74992200-75018200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr16:74992800-75017600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr16:74993200-75010400	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr16:74993400-75000600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr16:74993400-75002600	Weak transcription	Primary B cells from peripheral blood	blood
49	chr16:74993400-75007200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr16:74993400-75008000	Weak transcription	Primary T cells fromperipheralblood	blood

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