Variant report

Variant	rs72801562
Chromosome Location	chr2:55708452-55708453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10496048	0.81[AMR][1000 genomes]
rs17278009	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17792577	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4643582	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72801518	0.80[EUR][1000 genomes]
rs72801530	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72801531	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72801560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72801566	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72801568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72801571	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72801572	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72801575	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72801577	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72801580	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72801581	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72801584	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72801592	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72801594	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72801601	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72803508	0.85[EUR][1000 genomes]
rs72803511	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72803513	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72803515	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72803520	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72803525	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72803527	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72803529	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72803530	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72803534	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72803536	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72803541	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72803542	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72803543	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72803544	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72803546	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72803553	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72803566	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72803573	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72803576	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72803586	0.81[AMR][1000 genomes]
rs72803588	0.81[AMR][1000 genomes]
rs72803591	0.81[AMR][1000 genomes]
rs72803595	0.81[AMR][1000 genomes]
rs72805406	0.81[AMR][1000 genomes]
rs72805414	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006170	chr2:55530179-55809251	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv520581	chr2:55622825-55903016	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55706200-55709400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:55706400-55714600	Weak transcription	K562	blood
3	chr2:55708400-55711200	Enhancers	Cortex derived primary cultured neurospheres	brain

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