Variant report

Variant	rs72802114
Chromosome Location	chr2:59084611-59084612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1030020	1.00[AMR][1000 genomes]
rs2192693	1.00[AMR][1000 genomes]
rs72802106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:59078400-59087000	Weak transcription	Fetal Brain Male	brain
2	chr2:59079200-59093800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:59080400-59092000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:59081600-59085200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:59083800-59092200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:59084000-59086200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:59084200-59085000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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