Variant report

Variant	rs72803282
Chromosome Location	chr10:26798050-26798051
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr10:26797654-26798076	U2OS	brain:	n/a	n/a
2	POLR2A	chr10:26797768-26798871	GM12878	blood:	n/a	n/a
3	POLR2A	chr10:26797930-26801330	GM12891	blood:	n/a	n/a

Variant related genes	Relation type
RNA5SP307	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17668311	1.00[ASN][1000 genomes]
rs1832930	1.00[ASN][1000 genomes]
rs766676	1.00[ASN][1000 genomes]
rs7904192	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26769400-26800600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:26769400-26801000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:26769400-26802000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:26776600-26820200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:26780200-26834000	Strong transcription	Dnd41	blood
6	chr10:26780400-26805800	Strong transcription	Primary B cells from peripheral blood	blood
7	chr10:26780400-26837600	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr10:26780800-26827000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:26781000-26814000	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr10:26781000-26837400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr10:26781200-26800600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:26781200-26808000	Strong transcription	Primary B cells from cord blood	blood
13	chr10:26781600-26798600	Strong transcription	Liver	Liver
14	chr10:26784400-26808200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:26792400-26813400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr10:26792800-26799600	Strong transcription	GM12878-XiMat	blood
17	chr10:26792800-26816600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr10:26792800-26819200	Strong transcription	Primary T cells from cord blood	blood
19	chr10:26793200-26798200	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr10:26793200-26843200	Strong transcription	Fetal Thymus	thymus
21	chr10:26793400-26799000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:26794000-26801200	Strong transcription	Adipose Nuclei	Adipose
23	chr10:26794000-26801600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:26794600-26801000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr10:26794600-26801200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:26794800-26800400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr10:26795000-26800400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr10:26795000-26800600	Weak transcription	Lung	lung
29	chr10:26795000-26800600	Weak transcription	Spleen	Spleen
30	chr10:26795200-26801200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr10:26796000-26800000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr10:26796400-26798600	Strong transcription	Primary hematopoietic stem cells	blood
33	chr10:26796800-26798200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:26797000-26800400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:26797000-26801000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:26797000-26801200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:26797200-26801200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:26797400-26798200	Weak transcription	Thymus	Thymus
39	chr10:26797400-26811400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:26798000-26798400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
41	chr10:26798000-26798400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links