Variant report

Variant	rs72804825
Chromosome Location	chr13:81041881-81041882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17138924	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2271225	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72804814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72804815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72804820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72804829	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72804830	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72804832	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72804839	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72804843	0.92[EUR][1000 genomes]
rs72804844	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72804845	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051103	chr13:80741091-81649888	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv541842	chr13:80741091-81649888	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:81029200-81043200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr13:81029800-81043000	Weak transcription	HSMM	muscle
3	chr13:81033600-81043200	Weak transcription	HUVEC	blood vessel
4	chr13:81036000-81043200	Weak transcription	Spleen	Spleen
5	chr13:81037200-81042400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr13:81037200-81042600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr13:81038200-81043000	Weak transcription	HMEC	breast
8	chr13:81038400-81043000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:81038400-81043000	Weak transcription	Left Ventricle	heart
10	chr13:81038400-81043000	Weak transcription	Right Atrium	heart
11	chr13:81038400-81043000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr13:81038400-81043200	Weak transcription	Colon Smooth Muscle	Colon
13	chr13:81038400-81043200	Weak transcription	Right Ventricle	heart
14	chr13:81038400-81044200	Weak transcription	Fetal Heart	heart
15	chr13:81040000-81042600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr13:81040200-81042400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr13:81040200-81043400	Weak transcription	Liver	Liver
18	chr13:81041200-81042400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr13:81041600-81042600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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