Variant report

Variant	rs72806536
Chromosome Location	chr2:47197329-47197330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:47167293..47170062-chr2:47196955..47199343,2	K562	blood:
2	chr2:47168224..47170419-chr2:47197148..47199025,2	MCF-7	breast:
3	chr2:47196068..47199021-chr2:47522197..47525047,2	K562	blood:
4	chr2:47196076..47198728-chr2:47417712..47420454,3	MCF-7	breast:
5	chr2:47191916..47197742-chr2:47401234..47405560,7	MCF-7	breast:
6	chr2:47197025..47200212-chr2:47401779..47404367,3	K562	blood:
7	chr2:47195860..47200774-chr2:47207735..47210386,4	K562	blood:
8	chr2:47195345..47199186-chr2:47202255..47204268,3	MCF-7	breast:
9	chr2:47166867..47170590-chr2:47194468..47200247,20	MCF-7	breast:
10	chr2:47196446..47198984-chr2:47567520..47569154,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000143933	Chromatin interaction
ENSG00000180398	Chromatin interaction
ENSG00000068724	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13399571	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17036022	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17036033	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17480869	0.86[ASN][1000 genomes]
rs17480988	0.86[ASN][1000 genomes]
rs17481037	0.86[ASN][1000 genomes]
rs17481209	0.86[ASN][1000 genomes]
rs17540157	0.86[ASN][1000 genomes]
rs17540219	0.86[ASN][1000 genomes]
rs17540462	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3814035	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55641002	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55805005	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55824224	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58637066	0.86[ASN][1000 genomes]
rs58674434	0.86[ASN][1000 genomes]
rs59785154	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60732316	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726941	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6727430	0.86[ASN][1000 genomes]
rs6727529	0.86[ASN][1000 genomes]
rs6751599	0.86[ASN][1000 genomes]
rs6751621	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6754795	0.86[ASN][1000 genomes]
rs6755001	0.86[ASN][1000 genomes]
rs72806525	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806537	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806538	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806541	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806558	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72806562	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72806571	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7564728	0.86[ASN][1000 genomes]
rs7576915	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817517	chr2:46819371-47715140	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
2	nsv457352	chr2:47004788-47325973	Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv581749	chr2:47004788-47325973	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1004828	chr2:47056849-47814482	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
5	nsv524970	chr2:47162739-47302095	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1000377	chr2:47189386-47344029	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:47169800-47214600	Weak transcription	Fetal Kidney	kidney
2	chr2:47174400-47212400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:47177200-47210400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr2:47181600-47210800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:47184600-47197600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:47184600-47205000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr2:47185000-47206000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr2:47185200-47210200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:47185400-47205800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr2:47185400-47210400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:47186200-47200800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:47186400-47205600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr2:47186800-47205200	Weak transcription	Gastric	stomach
14	chr2:47186800-47205800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr2:47187400-47206000	Weak transcription	Fetal Brain Female	brain
16	chr2:47187800-47203200	Weak transcription	Brain Germinal Matrix	brain
17	chr2:47187800-47210200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr2:47188000-47205200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr2:47188000-47207000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr2:47191200-47198800	Enhancers	Placenta	Placenta
21	chr2:47193800-47204000	Strong transcription	Primary T cells from cord blood	blood
22	chr2:47194800-47197600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr2:47194800-47198800	Enhancers	Placenta Amnion	Placenta Amnion
24	chr2:47194800-47200200	Strong transcription	Thymus	Thymus
25	chr2:47195000-47198800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr2:47195000-47198800	Genic enhancers	Fetal Intestine Small	intestine
27	chr2:47195200-47197600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr2:47195200-47202200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr2:47195400-47202000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr2:47195600-47197400	Weak transcription	Right Atrium	heart
31	chr2:47195600-47197600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr2:47195600-47199000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr2:47195600-47200200	Enhancers	Stomach Mucosa	stomach
34	chr2:47195600-47205200	Weak transcription	Fetal Lung	lung
35	chr2:47195600-47210400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr2:47195600-47212800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr2:47195800-47197400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:47195800-47197400	Weak transcription	Left Ventricle	heart
39	chr2:47195800-47197400	Weak transcription	Psoas Muscle	Psoas
40	chr2:47195800-47197400	Weak transcription	HUVEC	blood vessel
41	chr2:47195800-47197600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr2:47195800-47197600	Weak transcription	NH-A	brain
43	chr2:47195800-47198000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr2:47195800-47198800	Enhancers	NHEK	skin
45	chr2:47195800-47199000	Enhancers	Liver	Liver
46	chr2:47195800-47199200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr2:47195800-47199200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr2:47195800-47199800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr2:47195800-47199800	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr2:47195800-47200000	Enhancers	HMEC	breast

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