Variant report
| Variant | rs72808014 |
|---|---|
| Chromosome Location | chr5:164473576-164473577 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1345583 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1363109 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1363111 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1421691 | 0.82[EUR][1000 genomes] |
| rs1421708 | 0.83[EUR][1000 genomes] |
| rs1421709 | 0.83[EUR][1000 genomes] |
| rs1421716 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1421717 | 0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2052451 | 0.86[EUR][1000 genomes] |
| rs2161105 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs56118546 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs61225023 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs66859522 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72809516 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs72809518 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72809520 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72809532 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72809533 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72815307 | 0.82[EUR][1000 genomes] |
| rs969901 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs969902 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv995060 | chr5:163660200-164620500 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv528624 | chr5:164319435-164701201 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1033866 | chr5:164419608-164677758 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv883092 | chr5:164443094-164529549 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv1031772 | chr5:164451602-164512911 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv823337 | chr5:164467239-164473740 | ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:164473000-164473600 | ZNF genes & repeats | Pancreas | Pancrea |
