Variant report

Variant	rs7280882
Chromosome Location	chr21:17671138-17671139
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28401314	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834051	chr21:17564843-17721764	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
3	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
4	esv2830061	chr21:17667720-17693951	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17658600-17674800	Weak transcription	Brain Hippocampus Middle	brain
2	chr21:17658600-17675200	Weak transcription	Ovary	ovary
3	chr21:17658800-17675200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr21:17659600-17674800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr21:17659600-17674800	Weak transcription	Brain Substantia Nigra	brain
6	chr21:17659600-17675000	Weak transcription	Brain Angular Gyrus	brain
7	chr21:17659600-17675200	Weak transcription	Adipose Nuclei	Adipose
8	chr21:17664000-17675000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr21:17667400-17677000	Weak transcription	Psoas Muscle	Psoas
10	chr21:17667600-17679800	Weak transcription	Hela-S3	cervix
11	chr21:17669200-17674600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr21:17669200-17674800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr21:17669400-17671200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr21:17670000-17682200	Weak transcription	Fetal Stomach	stomach
15	chr21:17670800-17675000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr21:17670800-17675200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr21:17670800-17675200	Weak transcription	Brain Germinal Matrix	brain
18	chr21:17671000-17671400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr21:17671000-17675200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr21:17671000-17675200	Weak transcription	Fetal Muscle Leg	muscle

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