Variant report
| Variant | rs7281070 |
|---|---|
| Chromosome Location | chr21:16847702-16847703 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000180530 | Chromatin interaction |
| ENSG00000236471 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs2205584 | 1.00[EUR][1000 genomes] |
| rs2823401 | 1.00[EUR][1000 genomes] |
| rs2823409 | 1.00[EUR][1000 genomes] |
| rs2823410 | 1.00[EUR][1000 genomes] |
| rs28510398 | 1.00[EUR][1000 genomes] |
| rs28542389 | 1.00[EUR][1000 genomes] |
| rs58121414 | 1.00[EUR][1000 genomes] |
| rs6517555 | 1.00[EUR][1000 genomes] |
| rs7278687 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73360907 | 1.00[EUR][1000 genomes] |
| rs7510266 | 1.00[EUR][1000 genomes] |
| rs8128615 | 0.84[AFR][1000 genomes] |
| rs8129950 | 1.00[EUR][1000 genomes] |
| rs9977671 | 1.00[EUR][1000 genomes] |
| rs9980143 | 1.00[EUR][1000 genomes] |
| rs9981034 | 1.00[EUR][1000 genomes] |
| rs9983961 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1063385 | chr21:16521617-16926212 | Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1064280 | chr21:16664312-17049272 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv834049 | chr21:16717421-16905300 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:16845600-16855000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
